this isnt an answer to your question but did the doctor say put him on a soy formula? or lactose free formula(yes there is a difference) cos every thing i have read has recommended not giving soy esp to boys.
are you still breast feeding him at all?? did the doctor say any thing about you also avoiding dairyif you are??
dont feel bad about giving formula when you did, i wouldnt think that was the issue. but giving him the probiotic should help lots any way.
hope it sorts out soon for your little man



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