As you say, different clinics do it differently. I think that the skills required for each test are rather different - so it is everyone's interests for the clinics to get very very good at one or the other.
It is safe to take one cell from a day 3 embryo - the downside of this technique is that there is only one cell's worth of genetic material to test, so getting a reliable test is more challenging. In short - the genetic material gets put through something like a gene photocopier to make enough DNA to test. And then they hunt for the defective gene or genes. If the defective gene is absent, then either the embryo doesn't carry it or the gene photocopier didn't copy it. This latter effect is very possible, so for a day 3 embryo test they also have to find linked genes that can be used to test the test. When we used pgd it took 3 years to get the test sorted out (this was a few years ago).
If you have more cells then this is less of an issue, and test development is usually quicker. The downside is that there will be some embryos that don't make it from day 3 to day 5 that might have survived if they were in a uterus rather than a flask. In some ways this is OK - in effect it is screening and putting back the strongest and most likely to implant embryos; but it can be heartbreaking if the only embryos you have don't get to day 5.
I think you said in the other thread that you were screening for general 'older egg' chromosome problems rather than a specific gene - does the more expensive clinic screen for more potential problems?? I don't think that the costs involved in rearing embryos for another couple of days should be particularly high.


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