I have had endometriomas in both ovaries and large ones removed during a lap in 06. It may(?) be possible that they can remove some of it during an EPU if it is a small amount. The thing with endometriomas is if during EPU they pick up an egg and they catch some endometrioma fluid at the same time I have been told it can damage the egg. I continued having EPUs with suspected further endometriomas and my FS would occasionally tell me she sucked some out at EPU but not at the same time as the egg.
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