you control your own preferences. Voting Green gets you great Greens MPs and Senators, but if your Green candidate doesn't finish in the final count - your vote flows at full value to the other candidate that you prefer.
In the House, you can number every box in whatever order you prefer, and that's how your vote will flow. This means you can vote Green and know that your vote will elect your preferred MP from the two final contenders, even if a Green isn't one of them. 'How to vote cards' are advice from parties; you don't need to follow them if you don't agree with them.
In the Senate, if you vote 1 Greens above the line your preferences flow according to the list we need to lodge in order for your vote to count. You can see them all here:
2013 federal election candidates - Australian Electoral Commission. If you don't agree with that allocation, you can still vote Green, by numbering all the candidates below the line starting with the Greens candidates. That way, you have total control over your vote.
Hope that's useful!
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