Congratulations on your pregnancy.
My DD is Maya.
I also love Lilliana and Danya.
Out of your choices, I like Isabella.
DS is Daniel. So i obviously love that name.
Lucas would have been our second choice.

I'm just going to be honest and say, I really don't like Esme, Isla, Dean or Isaac. No offence, just my personal opinion. I just don't find they have a nice ring to them.

Definitely don't do Ruby Rose. Unless you're ok with everyone thinking you named your daughter after a celebrity.

I can't really help you with name combos as I don't do middle names. I find most combos sound weird. But it also depends on your last name whether the names will sound good. I general, I think a name sounds more balanced if the first and middle name have diffferent lengths. So either short name + long name or long name + short name. If both names have the same amount of syllables, it often sounds a bit boring.

Maybe
Riley Benjamin or Noah Benjamin
I think Ruby Isabella sounds a little more balanced than Ruby Isabelle
Olivia Rose
Ruby Esmeralda, Esmeralda Ruby
Esmeralda Lilly, Lilly Esmeralda
You can still call her Esme.